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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10820982_10823728_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10820982 - 10823728
Intron Length:
2747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTTC
5'SS Class:
major
3'SS Sequence:
TATGTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTTATTATGT
Flanking Amino Acid:
PIEMQLTSAKCLTSMCRAGA
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
76.8
32.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.4
0.75
0.8
77.5
36.5
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
48.9
-0
2.1
73.38
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003230
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003338
10815744 - 10864208
48465