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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10823986_10827683_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10823986 - 10827683
Intron Length:
3698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTCATATCA
Flanking Amino Acid:
AHLLVSTSYKVRMQALKCFS
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74.4
35.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.6
0.69
0.9
76.6
36.7
Minor 5ss
35.3
-1.7
3.3
48.7
41.3
Minor BPS
56.5
0.2
1.9
72.85
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003230
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003338
10815744 - 10864208
48465