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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10827765_10832891_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10827765 - 10832891
Intron Length:
5127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATATATAATT
Flanking Amino Acid:
ICQIFSHCCKGPDHQTILFN
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
74.4
35.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.1
0.95
0.5
89.1
19.9
Minor 5ss
34.5
-1.8
3
40.9
39.3
Minor BPS
53.7
0.19
1.7
73.35
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003230
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003338
10815744 - 10864208
48465