About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10868926_10869839_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10868926 - 10869839
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGACC
5'SS Class:
major
3'SS Sequence:
TATTTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATTTTTGTACA
Flanking Amino Acid:
KCLPHRDFLQIIDVEHDPAA
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68.5
36.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.3
0.77
0.9
80.1
37.1
Minor 5ss
28.2
-2.5
3
35.2
41
Minor BPS
53
0.09
1.8
68.7
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002977
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003033
10867573 - 10874177
6605