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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10872308_10873606_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10872308 - 10873606
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGCAC
5'SS Class:
major
3'SS Sequence:
CTCAATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTTTCTCAATG
Flanking Amino Acid:
GIFKSHDYRKGHFECPPYNQ
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
64.1
42.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
72.7
0.51
1
68.6
41.7
Minor 5ss
30
-2.3
3.4
41
45.6
Minor BPS
62.8
0.27
1.6
66.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002977
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003033
10867573 - 10874177
6605