Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10873688_10873774_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10873688 - 10873774

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAGGCTCG

5'SS Class:

major

3'SS Sequence:

CCCTCTGCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

CCCGCTGTGACG

Flanking Amino Acid:

GWVAPNIYYLGYAGVVRFRG

Intron Amino Acid Position:

108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.5

0.44

1.2

54.2

45.7

Major BPS

0.22

1.2

52.4

43.3

Major PPT

69.4

0.44

0.8

61.1

35.2

Minor 5ss

42.3

-0.8

3.1

47.7

47.9

Minor BPS

42.1

-0.7

2.1

40.84

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003033

10867573 - 10874177

6605