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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10873900_10873980_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10873900 - 10873980
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
CGTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCCAAC
U12 Branch Point Sequence:
GCCGCCGCAGCT
Flanking Amino Acid:
AKYRHMQSFYRYYSGEKKAP
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57.1
42.2
Major BPS
42.7
-0.4
1.3
44.3
36.5
Major PPT
69.3
0.43
0.9
62.1
34.8
Minor 5ss
31.7
-2.1
3.3
39.7
45.8
Minor BPS
38.9
-0.7
2.3
52.32
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002977
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003033
10867573 - 10874177
6605