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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10892028_10901763_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10892028 - 10901763
Intron Length:
9736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTATATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATTTGTTAATT
Flanking Amino Acid:
LIQQAPEVIKVQSKQEKKPG
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
81.8
0.72
0.9
78.4
39.4
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
65.9
0.58
2
84.43
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002781
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002845
10890087 - 10920575
30489