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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10902025_10903852_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10902025 - 10903852
Intron Length:
1828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGCT
5'SS Class:
major
3'SS Sequence:
TGTTTCGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGTAT
U12 Branch Point Sequence:
TGTTTCGTTACA
Flanking Amino Acid:
NICEMGKIAKICGCPLYWKA
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
37.3
Major BPS
53.8
0.09
1.6
57.4
49.1
Major PPT
82.6
0.73
0.9
76.3
37.8
Minor 5ss
38.6
-1.3
3.4
57.4
46.8
Minor BPS
51
0.02
2.3
71.5
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002781
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002845
10890087 - 10920575
30489