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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10916187_10916710_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10916187 - 10916710
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
ACGTGTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACG
Flanking Amino Acid:
IERIFSGAVVRGNEIQKEGR
Intron Amino Acid Position:
926

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.9
0.56
1
65.4
45
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
65.1
0.33
1.8
74.22
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002781
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002845
10890087 - 10920575
30489