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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10916801_10918045_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10916801 - 10918045
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGACTG
5'SS Class:
major
3'SS Sequence:
TCTTCTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CTTTCTCTAATC
Flanking Amino Acid:
ISEEDKRSATSIEYWFRCMD
Intron Amino Acid Position:
956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.2
60.2
44.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
86.7
0.83
0.7
80
31.9
Minor 5ss
38
-1.4
3
48.2
47.4
Minor BPS
64.9
0.45
1.7
74.53
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002781
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002845
10890087 - 10920575
30489