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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10918854_10920464_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10918854 - 10920464
Intron Length:
1611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAATC
5'SS Class:
major
3'SS Sequence:
CTGCTCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAC
U12 Branch Point Sequence:
TGTGCTTCACCA
Flanking Amino Acid:
EQRDPFAVQKDIENDGPEPS
Intron Amino Acid Position:
1055

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
74
34.5
Major BPS
61.5
0.29
1
58.7
38.1
Major PPT
75.8
0.58
0.8
73.7
31.4
Minor 5ss
43.5
-0.7
3
60.5
44.2
Minor BPS
48.9
-0
1.9
63.91
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002781
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002845
10890087 - 10920575
30489