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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10933961_10946053_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10933961 - 10946053
Intron Length:
12093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TGTGGCTTGAGT
Flanking Amino Acid:
FRQSLSCCVCGNLLQDPIAP
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
69.5
36.8
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
85.7
0.8
0.6
85.9
21.2
Minor 5ss
27.6
-2.6
3
34.7
41.5
Minor BPS
48.9
-0
2.2
71.53
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000628
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000600
10932363 - 10946195
13833