Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10969986_10971228_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10969986 - 10971228

Intron Length:

1243

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGTG

5'SS Class:

strong_major

3'SS Sequence:

CTCCCTCCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAC

U12 Branch Point Sequence:

TTTTGCTTTACT

Flanking Amino Acid:

ALTDFTFMVKDTSYLFITGP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.9

76.9

38.6

Major BPS

73.6

0.59

0.9

63.3

35.6

Major PPT

69.4

0.44

0.7

61.6

Minor 5ss

32.8

-2

3.7

45.9

49.3

Minor BPS

69.9

0.71

2.1

92.33

36.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002451

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002483

10967097 - 10979496

12400