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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10972321_10975997_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10972321 - 10975997
Intron Length:
3677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
TTACCCTTATTT
Flanking Amino Acid:
PAPVCECHDPSDRLVPELDT
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
89.2
0.88
0.7
85.2
29.3
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
68.1
0.65
1.6
82.58
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002451
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002483
10967097 - 10979496
12400