Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10976080_10978181_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10976080 - 10978181

Intron Length:

2102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTCTG

5'SS Class:

major

3'SS Sequence:

AACTCTCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

CTCTGCCTAACT

Flanking Amino Acid:

AYDMLDIIHAIVDEREFFEI

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.56

1.1

45.2

Major BPS

0.3

62.3

30.4

Major PPT

76.7

0.6

0.9

69.8

35.6

Minor 5ss

40.7

-1

3.1

60.3

43.9

Minor BPS

54.7

0.23

2.2

76.28

46.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002451

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002483

10967097 - 10979496

12400