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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_10978306_10979266_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10978306 - 10979266
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAGAC
5'SS Class:
major
3'SS Sequence:
TTCTTAACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTTTTCTTAACT
Flanking Amino Acid:
IVGNQPKVASGCLDINSSVK
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
70.7
33.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
77.4
0.62
0.8
75.6
33.1
Minor 5ss
27.1
-2.6
3.1
33
42.2
Minor BPS
88.3
1.28
0.9
96.56
28.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002451
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002483
10967097 - 10979496
12400