About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11008151_11008192_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11008151 - 11008192
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATATTTA
5'SS Class:
major
3'SS Sequence:
TTTGTTGACATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGATTTAATA
Flanking Amino Acid:
SLHPVDRREGSPLMVSLLFN
Intron Amino Acid Position:
844

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
70
36.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.6
0.44
1
65.5
40.3
Minor 5ss
48.8
-0.1
2.6
57.6
47.1
Minor BPS
65.6
0.48
1.6
75.77
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016390
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017114
10990717 - 11127204
136488