Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11026255_11031613_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11026255 - 11031613

Intron Length:

5359

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTACGTGTT

5'SS Class:

major

3'SS Sequence:

TCTCTCATTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATTAT

U12 Branch Point Sequence:

TCTTTATTATCT

Flanking Amino Acid:

STLKRLTSFHNAHDLTKWDL

Intron Amino Acid Position:

685

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

79.2

34.9

Major BPS

84.7

0.86

74.3

40.7

Major PPT

78.2

0.63

0.8

70.4

34.9

Minor 5ss

39.3

-1.2

3.6

57.6

41.4

Minor BPS

60.3

0.4

1.9

80.47

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019301

10990717 - 11064528

73812

ENSAPLT00000017114

10990717 - 11127204

136488