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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1103127_1108666_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1103127 - 1108666
Intron Length:
5540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TCTGCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTCTGCATTT
Flanking Amino Acid:
QEDLIVMFVECYNVIFAGGP
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
80.8
0.69
0.9
77.3
35.9
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
47.1
-0.1
2.3
75.55
42.1

Associated Gene:

Gene:
PLOD2
Ensembl Gene ID:
ENSAPLG00000011127
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046994
1075107 - 1134504
59398
ENSAPLT00000040431
1086663 - 1134290
47628
ENSAPLT00000039176
1086663 - 1134290
47628
ENSAPLT00000011705
1101365 - 1134290
32926