Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11031685_11033702_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11031685 - 11033702

Intron Length:

2018

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTTGTTTC

5'SS Class:

major

3'SS Sequence:

TTTTCATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CATTCATGAATT

Flanking Amino Acid:

NHSVEDLLQEGEEADDDDIY

Intron Amino Acid Position:

662

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

76.1

Major BPS

100

1.24

0.5

100

Major PPT

91.2

0.93

0.7

89.3

26.1

Minor 5ss

47.2

-0.3

2.4

61.9

42.9

Minor BPS

58.8

0.36

1.8

75.52

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019301

10990717 - 11064528

73812

ENSAPLT00000017114

10990717 - 11127204

136488