Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11034393_11037334_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11034393 - 11037334

Intron Length:

2942

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTGGT

5'SS Class:

major

3'SS Sequence:

TGATCACTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TATTTTTGATCA

Flanking Amino Acid:

PPVGRGTGKRVLTAKERKTQ

Intron Amino Acid Position:

533

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

69.9

41.1

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

74.1

0.54

0.9

66.8

39.3

Minor 5ss

35.7

-1.6

3.3

45.7

43.5

Minor BPS

55.1

0.16

1.7

68.86

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019301

10990717 - 11064528

73812

ENSAPLT00000017114

10990717 - 11127204

136488