Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11037439_11038566_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11037439 - 11038566

Intron Length:

1128

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTTCCCTCCGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCATCAA

U12 Branch Point Sequence:

CAAAGCTGATCT

Flanking Amino Acid:

LLEEPVQGEEAMSDRQESAL

Intron Amino Acid Position:

498

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

79.8

33.2

Major BPS

66.5

0.41

1.1

68.2

37.5

Major PPT

74.2

0.54

0.7

69.5

24.3

Minor 5ss

44.8

-0.6

3.2

66.9

44.3

Minor BPS

42.3

-0.5

2.1

55.84

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019301

10990717 - 11064528

73812

ENSAPLT00000017114

10990717 - 11127204

136488