Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11046640_11051373_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11046640 - 11051373

Intron Length:

4734

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGGA

5'SS Class:

strong_major

3'SS Sequence:

AATTCCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TTTTTTGTCACT

Flanking Amino Acid:

KLELFTNRFKDRIVSMTLDK

Intron Amino Acid Position:

358

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

75.2

35.1

Major BPS

70.8

0.52

70.6

31.6

Major PPT

81.6

0.71

0.8

35.4

Minor 5ss

29.8

-2.3

3.3

38.8

46.3

Minor BPS

0.14

2.4

82.56

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017114

10990717 - 11127204

136488

ENSAPLT00000019301

10990717 - 11064528

73812