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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11067491_11073126_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11067491 - 11073126
Intron Length:
5636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ATTTACTTAGTA
Flanking Amino Acid:
IRKMTEEFDEDSGDYPLTMP
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
63
0.4
1.7
75.04
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016390
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017114
10990717 - 11127204
136488