About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11073204_11100924_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11073204 - 11100924
Intron Length:
27721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGAAC
5'SS Class:
major
3'SS Sequence:
TATTATATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTCCCTTATTA
Flanking Amino Acid:
NFFIQCSGCRGTVRIEMFRN
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.5
39
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.6
0.69
0.9
73.9
39.9
Minor 5ss
30.8
-2.2
3.4
42.1
44.9
Minor BPS
65.5
0.48
1.6
73.84
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016390
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017114
10990717 - 11127204
136488