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Intron Name: Anas_platyrhynchos_platyrhynchos_9_1109859_1111458_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1109859 - 1111458

Intron Length:

1600

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGTAGT

5'SS Class:

major

3'SS Sequence:

ACTTTTATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

CTACTTTTATTT

Flanking Amino Acid:

TKIYVDPLTREQINITLDHK

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

1.1

72.7

44.5

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

84.4

0.77

0.8

81.9

33.7

Minor 5ss

35.6

-1.6

3.1

42.2

44.7

Minor BPS

50.1

0.08

1.6

65.13

40.2

Associated Gene:

Gene:

PLOD2

Ensembl Gene ID:

ENSAPLG00000011127

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039176

1086663 - 1134290

47628

ENSAPLT00000011705

1101365 - 1134290

32926

ENSAPLT00000046994

1075107 - 1134504

59398

ENSAPLT00000040431

1086663 - 1134290

47628