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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11101022_11114639_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11101022 - 11114639
Intron Length:
13618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTCTTGACA
Flanking Amino Acid:
VVKLGKSAMQSVVDDWIESY
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86.3
0.82
0.9
84
31
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
85.2
1.1
0.9
90.04
24.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016390
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017114
10990717 - 11127204
136488