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Intron Name: Anas_platyrhynchos_platyrhynchos_9_1111523_1112284_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1111523 - 1112284

Intron Length:

762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

TATTAATTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGTTCCTTATTA

Flanking Amino Acid:

TIFQTLNGAIDEVLLKFEEG

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.8

83.2

28.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.9

0.69

0.9

74.3

39.8

Minor 5ss

36.4

-1.5

3.3

45.9

43.7

Minor BPS

0.72

1.5

80.17

35.9

Associated Gene:

Gene:

PLOD2

Ensembl Gene ID:

ENSAPLG00000011127

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046994

1075107 - 1134504

59398

ENSAPLT00000040431

1086663 - 1134290

47628

ENSAPLT00000039176

1086663 - 1134290

47628

ENSAPLT00000011705

1101365 - 1134290

32926