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Intron Name: Anas_platyrhynchos_platyrhynchos_9_1112383_1114730_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1112383 - 1114730

Intron Length:

2348

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

ATTTGTTTACCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTCAT

U12 Branch Point Sequence:

GTAACCTGAATT

Flanking Amino Acid:

VTVLGNGPTKIHLNYLGNYI

Intron Amino Acid Position:

237

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

0.9

74.7

28.6

Major BPS

69.7

0.49

1.3

71.4

45.1

Major PPT

77.7

0.62

70.8

43.8

Minor 5ss

29.2

-2.4

3.1

34.7

35.4

Minor BPS

63.7

0.51

1.5

75.97

40.1

Associated Gene:

Gene:

PLOD2

Ensembl Gene ID:

ENSAPLG00000011127

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046994

1075107 - 1134504

59398

ENSAPLT00000040431

1086663 - 1134290

47628

ENSAPLT00000039176

1086663 - 1134290

47628

ENSAPLT00000011705

1101365 - 1134290

32926