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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1114833_1118735_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1114833 - 1118735
Intron Length:
3903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TGTGTCAAAATA
Flanking Amino Acid:
LDLLDLSTVKEHPRVKIGVF
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
79
0.72
1
78.4
31.2
Major PPT
82.6
0.73
0.8
81.6
35.5
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
46.3
-0.2
2
60.1
40.4

Associated Gene:

Gene:
PLOD2
Ensembl Gene ID:
ENSAPLG00000011127
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046994
1075107 - 1134504
59398
ENSAPLT00000040431
1086663 - 1134290
47628
ENSAPLT00000039176
1086663 - 1134290
47628
ENSAPLT00000011705
1101365 - 1134290
32926