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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1118862_1119444_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1118862 - 1119444
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
AACATGATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTACAA
Flanking Amino Acid:
EALSIFIHNNEVYHEKHIKK
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
100
1.24
0.5
100
0
Major PPT
63.8
0.31
1.1
54.5
43.8
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
59.9
0.31
2
78.09
38.1

Associated Gene:

Gene:
PLOD2
Ensembl Gene ID:
ENSAPLG00000011127
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040431
1086663 - 1134290
47628
ENSAPLT00000039176
1086663 - 1134290
47628
ENSAPLT00000011705
1101365 - 1134290
32926
ENSAPLT00000046994
1075107 - 1134504
59398