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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1119567_1124816_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1119567 - 1124816
Intron Length:
5250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAACTTCT
5'SS Class:
weak_major
3'SS Sequence:
TTTGTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACCAT
U12 Branch Point Sequence:
AGTAAGCTAACC
Flanking Amino Acid:
LSQAEARNMGMDLCRQDKAC
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
74.4
36.7
Major BPS
57.8
0.19
1.3
67.1
39.2
Major PPT
86.5
0.82
0.7
85.4
29.4
Minor 5ss
52.9
0.1
2.5
72.8
36.6
Minor BPS
42.1
-0.6
2.4
56.61
41

Associated Gene:

Gene:
PLOD2
Ensembl Gene ID:
ENSAPLG00000011127
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046994
1075107 - 1134504
59398
ENSAPLT00000040431
1086663 - 1134290
47628
ENSAPLT00000039176
1086663 - 1134290
47628
ENSAPLT00000011705
1101365 - 1134290
32926