About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11249057_11251815_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11249057 - 11251815
Intron Length:
2759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTGCTTTATTT
Flanking Amino Acid:
ETQTLNFGPEWLRALSSGGS
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.5
0.66
0.8
78
35.1
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
59.4
0.37
1.7
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014162
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038681
11248978 - 11314771
65794
ENSAPLT00000014855
11248978 - 11314771
65794