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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1124922_1126106_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1124922 - 1126106
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTAGTGT
5'SS Class:
major
3'SS Sequence:
TGTCACTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTTTCTAATT
Flanking Amino Acid:
KTLKLLIEQNRKIIAPLVTR
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1
61.5
39.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.9
0.67
0.9
73.2
36.8
Minor 5ss
38.4
-1.3
3.4
55.4
48.8
Minor BPS
63.3
0.5
1.6
80.73
35.2

Associated Gene:

Gene:
PLOD2
Ensembl Gene ID:
ENSAPLG00000011127
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011705
1101365 - 1134290
32926
ENSAPLT00000046994
1075107 - 1134504
59398
ENSAPLT00000040431
1086663 - 1134290
47628
ENSAPLT00000039176
1086663 - 1134290
47628