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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11251946_11254223_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11251946 - 11254223
Intron Length:
2278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
AATTTTCATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTATTTAATT
Flanking Amino Acid:
MLALFLKDNKIPSDLLDKEF
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
100
1.24
0.5
100
0
Major PPT
72.4
0.51
0.9
67
38.7
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
73.7
0.82
1.4
86.11
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014162
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038681
11248978 - 11314771
65794
ENSAPLT00000014855
11248978 - 11314771
65794