Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11260821_11267645_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11260821 - 11267645

Intron Length:

6825

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

ATTTGTTCAAAC

Flanking Amino Acid:

PRGRSSSRGRGRGRGESGFY

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.84

0.9

74.8

38.1

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

90.6

0.91

0.7

88.7

28.3

Minor 5ss

40.1

-1.1

3.1

55.9

48.3

Minor BPS

49.3

-0

66.24

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038681

11248978 - 11314771

65794

ENSAPLT00000014855

11248978 - 11314771

65794