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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11268402_11287598_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11268402 - 11287598
Intron Length:
19197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
GTTCACTTATGT
Flanking Amino Acid:
RFEKPGRKDPVRPNFEEGGT
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
71.3
0.53
1
61.3
37
Major PPT
89.8
0.89
0.7
84.7
30.1
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
48.7
-0
2.1
71.49
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014162
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014855
11248978 - 11314771
65794
ENSAPLT00000038681
11248978 - 11314771
65794