Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11297321_11298346_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11297321 - 11298346

Intron Length:

1026

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGATTG

5'SS Class:

major

3'SS Sequence:

TTTTCTTTTGAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACAAAA

U12 Branch Point Sequence:

TTTCTTTTGAAG

Flanking Amino Acid:

QHLQYQHLLIQQQYAQVLAQ

Intron Amino Acid Position:

633

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

66.6

Major BPS

51.5

0.04

0.9

57.3

24.9

Major PPT

84.3

0.77

0.9

86.8

24.4

Minor 5ss

43.7

-0.7

3.1

62.1

43.2

Minor BPS

56.6

0.06

1.5

64.42

37.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038681

11248978 - 11314771

65794

ENSAPLT00000014855

11248978 - 11314771

65794