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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11299110_11299594_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11299110 - 11299594
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTATCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGCTTGTAATT
Flanking Amino Acid:
WELQSASQPTVWEGSSVWDL
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
80.4
0.68
0.8
74.1
35.7
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
50.7
0.1
2
72.08
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014162
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038681
11248978 - 11314771
65794
ENSAPLT00000014855
11248978 - 11314771
65794