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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1130169_1130535_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1130169 - 1130535
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGCATC
5'SS Class:
major
3'SS Sequence:
TTATTCTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GAATTCTTAATC
Flanking Amino Acid:
DLWQIFENPVDWKETYINPN
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
70.6
39.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.65
1
73.5
41.6
Minor 5ss
50.7
0.03
2.5
66
39.6
Minor BPS
70.2
0.61
1.2
69.04
36

Associated Gene:

Gene:
PLOD2
Ensembl Gene ID:
ENSAPLG00000011127
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046994
1075107 - 1134504
59398
ENSAPLT00000040431
1086663 - 1134290
47628
ENSAPLT00000039176
1086663 - 1134290
47628
ENSAPLT00000011705
1101365 - 1134290
32926