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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1131667_1132605_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1131667 - 1132605
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTCAAGACT
Flanking Amino Acid:
FGQWSGGKHQDSRISGGYEN
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.2
0.48
0.9
71.3
39.5
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
51.7
0.13
2
76.55
40

Associated Gene:

Gene:
PLOD2
Ensembl Gene ID:
ENSAPLG00000011127
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011705
1101365 - 1134290
32926
ENSAPLT00000046994
1075107 - 1134504
59398
ENSAPLT00000039176
1086663 - 1134290
47628