About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1131667_1132966_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1131667 - 1132966
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
GCATGTTGAAGT
Flanking Amino Acid:
FGQWSGGKHQGYALLNFVVK
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
86.8
0.83
0.8
84.8
35.4
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
44.1
-0.3
2.1
57.89
45

Associated Gene:

Gene:
PLOD2
Ensembl Gene ID:
ENSAPLG00000011127
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040431
1086663 - 1134290
47628