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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11325576_11325739_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11325576 - 11325739
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
TCTGTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CCAGCCTCACGC
Flanking Amino Acid:
THLHRLDTGDGSLGPGAIGA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
59.1
45.8
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
80.2
0.68
0.8
73.8
31.3
Minor 5ss
29.1
-2.4
3.5
38.2
46.7
Minor BPS
39.9
-0.7
2
42.45
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014155
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014735
11322369 - 11325849
3481