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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1132753_1132966_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1132753 - 1132966
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
GCATGTTGAAGT
Flanking Amino Acid:
LKVFAGYYTKGYALLNFVVK
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
86.8
0.83
0.8
84.8
35.4
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
44.1
-0.3
2.1
57.89
45

Associated Gene:

Gene:
PLOD2
Ensembl Gene ID:
ENSAPLG00000011127
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046994
1075107 - 1134504
59398
ENSAPLT00000039176
1086663 - 1134290
47628
ENSAPLT00000011705
1101365 - 1134290
32926