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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11328958_11329361_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11328958 - 11329361
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGGGGG
5'SS Class:
major
3'SS Sequence:
TGTCTCTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CCTTCCTGATGT
Flanking Amino Acid:
VLNILDKTDDGWIFGERLHD
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
51
43.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
74.4
0.55
0.9
72.9
37.4
Minor 5ss
27.7
-2.6
3.7
37.2
47.5
Minor BPS
48.8
-0
2.1
68.24
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013970
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014593
11328785 - 11376170
47386