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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11329964_11332332_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11329964 - 11332332
Intron Length:
2369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCCCTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTTAT
U12 Branch Point Sequence:
TTTTCCCTATGC
Flanking Amino Acid:
EASYMLKASSQSEMKRWMIS
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.8
34.6
Major BPS
58.5
0.21
1.4
51.4
46
Major PPT
82.3
0.73
0.8
77.6
29.9
Minor 5ss
32.8
-2
2.7
40.4
39.1
Minor BPS
53.5
0.09
2.2
75.04
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013970
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014593
11328785 - 11376170
47386