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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1133093_1134134_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1133093 - 1134134
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTTTGCTACA
Flanking Amino Acid:
ALNKVGEDFQGGGCKFLRYN
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
89
0.88
0.8
84.3
30.8
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
44.7
-0.4
2.4
66.46
40.2

Associated Gene:

Gene:
PLOD2
Ensembl Gene ID:
ENSAPLG00000011127
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046994
1075107 - 1134504
59398
ENSAPLT00000040431
1086663 - 1134290
47628
ENSAPLT00000039176
1086663 - 1134290
47628
ENSAPLT00000011705
1101365 - 1134290
32926