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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11333614_11335193_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11333614 - 11335193
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAGCA
5'SS Class:
major
3'SS Sequence:
TTCAAACTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTCAAACT
Flanking Amino Acid:
IQKKLEFKIKSVPIISHSRW
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
63.8
34.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69.1
0.43
0.9
59.3
41.6
Minor 5ss
36.2
-1.6
3.4
48.1
47.6
Minor BPS
58
0.33
2
83.74
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013970
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014593
11328785 - 11376170
47386