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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11335284_11337248_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11335284 - 11337248
Intron Length:
1965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCGTG
5'SS Class:
major
3'SS Sequence:
ATTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
ATCTTCCTATTC
Flanking Amino Acid:
ALDAHKELETVVKACNEGVR
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
67.4
44
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
85.6
0.8
0.8
77.7
36
Minor 5ss
40.4
-1.1
3.4
56.3
47.9
Minor BPS
48.2
-0.1
1.9
60.61
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013970
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014593
11328785 - 11376170
47386